Noah E. Dephoure: search on Z-Library

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1

A large-scale method to measure absolute protein phosphorylation stoichiometries

Wu, Ronghu, Haas, Wilhelm, Dephoure, Noah, Huttlin, Edward L, Zhai, Bo, Sowa, Mathew E, Gygi, Steven P

Journal:

Year:

2011

Language:

english

File:

PDF, 1.12 MB

english, 2011

2

Identification of Aneuploidy-Tolerating Mutations

Eduardo M. Torres, Noah Dephoure, Amudha Panneerselvam, Cheryl M. Tucker, Charles A. Whittaker, Steven P. Gygi, Maitreya J. Dunham, Angelika Amon

Journal:

Year:

2010

Language:

english

File:

PDF, 1.33 MB

english, 2010

3

Predicting peptide presentation by major histocompatibility complex class I: an improved machine learning approach to the immunopeptidome

Boehm, Kevin Michael, Bhinder, Bhavneet, Raja, Vijay Joseph, Dephoure, Noah, Elemento, Olivier

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 1.27 MB

english, 2019

4

Changes in Cell Morphology Are Coordinated with Cell Growth through the TORC1 Pathway

Goranov, Alexi I., Gulati, Amneet, Dephoure, Noah, Takahara, Terunao, Maeda, Tatsuya, Gygi, Steven P., Manalis, Scott, Amon, Angelika

Journal:

Current Biology

Year:

2013

Language:

english

File:

PDF, 1.75 MB

english, 2013

5

Robust, Reproducible, and Economical Phosphopeptide Enrichment Using Calcium Titanate

Ahmed, Adnan, Raja, Vijay J., Cavaliere, Paola, Dephoure, Noah

Journal:

Journal of Proteome Research

Year:

2019

Language:

english

File:

PDF, 1.22 MB

english, 2019

6

Serine-Dependent Sphingolipid Synthesis Is a Metabolic Liability of Aneuploid Cells

Hwang, Sunyoung, Gustafsson, H. Tobias, O’Sullivan, Ciara, Bisceglia, Gianna, Huang, Xinhe, Klose, Christian, Schevchenko, Andrej, Dickson, Robert C., Cavaliere, Paola, Dephoure, Noah, Torres, Eduardo

Journal:

Year:

2017

Language:

english

File:

PDF, 3.29 MB

english, 2017

7

Quantitative proteomic analysis reveals posttranslational responses to aneuploidy in yeast

Dephoure, Noah, Hwang, Sunyoung, O'Sullivan, Ciara, Dodgson, Stacie E, Gygi, Steven P, Amon, Angelika, Torres, Eduardo M

Journal:

Year:

2014

Language:

english

File:

PDF, 6.64 MB

english, 2014

8

SIRT4 Coordinates the Balance between Lipid Synthesis and Catabolism by Repressing Malonyl CoA Decarboxylase

Laurent, Gaëlle, German, Natalie J., Saha, Asish K., de Boer, Vincent C.J., Davies, Michael, Koves, Timothy R., Dephoure, Noah, Fischer, Frank, Boanca, Gina, Vaitheesvaran, Bhavapriya, Lovitch, Scott

Journal:

Year:

2013

Language:

english

File:

PDF, 1.45 MB

english, 2013

9

SDHAF4 Promotes Mitochondrial Succinate Dehydrogenase Activity and Prevents Neurodegeneration

Van Vranken, Jonathan G., Bricker, Daniel K., Dephoure, Noah, Gygi, Steven P., Cox, James E., Thummel, Carl S., Rutter, Jared

Journal:

Cell Metabolism

Year:

2014

Language:

english

File:

PDF, 2.44 MB

english, 2014

10

Identification of a Protein Mediating Respiratory Supercomplex Stability

Yu-Chan Chen, Eric B. Taylor, Noah Dephoure, Jin-Mi Heo, Aline Tonhato, Ioanna Papandreou, Nandita Nath, Nicolas C. Denko, Steven P. Gygi, Jared Rutter

Journal:

Cell Metabolism

Year:

2012

Language:

english

File:

PDF, 1.48 MB

english, 2012

11

Sphingosine Kinase 1 Regulates the Survival of Breast Cancer Stem Cells and Non-stem Breast Cancer Cells by Suppression of STAT1

Hii, Ling-Wei, Chung, Felicia Fei-Lei, Mai, Chun Wai, Yee, Zong Yang, Chan, Hong Hao, Raja, Vijay Joseph, Dephoure, Noah Elias, Pyne, Nigel J., Pyne, Susan, Leong, Chee-Onn

Journal:

Year:

2020

File:

PDF, 3.30 MB

2020

12

Deep Coverage of Global Protein Expression and Phosphorylation in Breast Tumor Cell Lines Using TMT 10-plex Isobaric Labeling

Huang, Fang-Ke, Zhang, Guoan, Lawlor, Kevin, Nazarian, Arpi, Philip, John, Tempst, Paul, Dephoure, Noah, Neubert, Thomas A.

Journal:

Journal of Proteome Research

Year:

2017

Language:

english

File:

PDF, 5.41 MB

english, 2017

13

A conserved signaling network monitors delivery of sphingolipids to the plasma membrane in budding yeast

Clarke, Jesse, Dephoure, Noah, Horecka, Ira, Gygi, Steven, Kellogg, Douglas, Riezman, Howard

Journal:

Molecular Biology of the Cell

Year:

2017

Language:

english

File:

PDF, 1.79 MB

english, 2017

14

Global analysis of protein expression in yeast

Ghaemmaghami, Sina, Huh, Won-Ki, Bower, Kiowa, Howson, Russell W., Belle, Archana, Dephoure, Noah, O'Shea, Erin K., Weissman, Jonathan S.

Journal:

Year:

2003

Language:

english

File:

PDF, 853 KB

english, 2003

15

A solid phase extraction-based platform for rapid phosphoproteomic analysis

Noah Dephoure, Steven P. Gygi

Journal:

Year:

2011

Language:

english

File:

PDF, 589 KB

english, 2011

16

Proteomic Profiling of Paclitaxel Treated Cells Identifies a Novel Mechanism of Drug Resistance Mediated by PDCD4

Xu, Hui, Dephoure, Noah, Sun, Huiying, Zhang, Haiyuan, Fan, Fangfang, Liu, Jiawei, Ning, Xuelian, Dai, Shaochun, Liu, Baogang, Gao, Min, Fu, Songbin, Gygi, Steven P., Zhou, Chunshui

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 923 KB

english, 2015

17

Constitutive activated Cdc42-associated kinase (Ack) phosphorylation at arrested endocytic clathrin-coated pits of cells that lack dynamin

Shen, Hongying, Ferguson, Shawn M., Dephoure, Noah, Park, Ryan, Yang, Yan, Volpicelli-Daley, Laura, Gygi, Steven, Schlessinger, Joseph, De Camilli, Pietro, Drubin, David G.

Journal:

Molecular Biology of the Cell

Year:

2011

Language:

english

File:

PDF, 2.31 MB

english, 2011

18

The effects of mass accuracy, data acquisition speed, and search algorithm choice on peptide identification rates in phosphoproteomics

Corey E. Bakalarski, Wilhelm Haas, Noah E. Dephoure, Steven P. Gygi

Journal:

Analytical and Bioanalytical Chemistry

Year:

2007

Language:

english

File:

PDF, 1010 KB

english, 2007

19

A Stress-Responsive System for Mitochondrial Protein Degradation

Jin-Mi Heo, Nurit Livnat-Levanon, Eric B. Taylor, Kevin T. Jones, Noah Dephoure, Julia Ring, Jianxin Xie, Jeffrey L. Brodsky, Frank Madeo, Steven P. Gygi, Kaveh Ashrafi, Michael H. Glickman, Jared Rut

Journal:

Year:

2010

Language:

english

File:

PDF, 1.78 MB

english, 2010

20

Quantitative Proteomic Atlas of Ubiquitination and Acetylation in the DNA Damage Response

Elia, Andrew E.H., Boardman, Alexander P., Wang, David C., Huttlin, Edward L., Everley, Robert A., Dephoure, Noah, Zhou, Chunshui, Koren, Itay, Gygi, Steven P., Elledge, Stephen J.

Journal:

Year:

2015

Language:

english

File:

PDF, 3.96 MB

english, 2015

21

A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage

Danny M. Chou, Britt Adamson, Noah E. Dephoure, Xu Tan, Amanda C. Nottke, Kristen E. Hurov, Steven P. Gygi, Monica P. Colaiácovo and Stephen J. Elledge

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.62 MB

english, 2010

22

Focal Adhesion- and IGF1R-Dependent Survival and Migratory Pathways Mediate Tumor Resistance to mTORC1/2 Inhibition

Yoon, Sang-Oh, Shin, Sejeong, Karreth, Florian A., Buel, Gwen R., Jedrychowski, Mark P., Plas, David R., Dedhar, Shoukat, Gygi, Steven P., Roux, Philippe P., Dephoure, Noah, Blenis, John

Journal:

Year:

2017

Language:

english

File:

PDF, 5.38 MB

english, 2017

23

Construction, verification and experimental use of two epitope-tagged collections of budding yeast strains

Russell Howson, Won-Ki Huh, Sina Ghaemmaghami, James V. Falvo, Kiowa Bower, Archana Belle, Noah Dephoure, Dennis D. Wykoff, Jonathan S. Weissman, Erin K. O'Shea

Journal:

Comparative and Functional Genomics

Year:

2005

Language:

english

File:

PDF, 433 KB

english, 2005

24

SIRT4 controls the balance between lipid synthesis and catabolism by repressing malonyl-CoA decarboxylase

Laurent, Gaëlle, German, Natalie J, Saha, Asish K, de Boer, Vincent CJ, Fischer, Frank, Boanca, Gina, Dephoure, Noah, Vaitheesvaran, Bhavapriya, Davies, Michael, Gygi, Steven P, Muoio, Deborah M, Kurl

Journal:

BMC Proceedings

Year:

2012

Language:

english

File:

PDF, 166 KB

english, 2012

25

Profiling DNA damage-induced phosphorylation in budding yeast reveals diverse signaling networks

Zhou, Chunshui, Elia, Andrew E. H., Naylor, Maria L., Dephoure, Noah, Ballif, Bryan A., Goel, Gautam, Xu, Qikai, Ng, Aylwin, Chou, Danny M., Xavier, Ramnik J., Gygi, Steven P., Elledge, Stephen J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.38 MB

english, 2016

26

KLF4 is involved in the organization and regulation of pluripotency-associated three-dimensional enhancer networks

Di Giammartino, Dafne Campigli, Kloetgen, Andreas, Polyzos, Alexander, Liu, Yiyuan, Kim, Daleum, Murphy, Dylan, Abuhashem, Abderhman, Cavaliere, Paola, Aronson, Boaz, Shah, Veevek, Dephoure, Noah, Sta

Journal:

Nature Cell Biology

Year:

2019

Language:

english

File:

PDF, 2.91 MB

english, 2019

27

Mitochondrial Biogenesis and Proteome Remodeling Promote One-Carbon Metabolism for T Cell Activation

Ron-Harel, Noga, Santos, Daniel, Ghergurovich, Jonathan M., Sage, Peter T., Reddy, Anita, Lovitch, Scott B., Dephoure, Noah, Satterstrom, F. Kyle, Sheffer, Michal, Spinelli, Jessica B., Gygi, Steven,

Journal:

Cell Metabolism

Year:

2016

Language:

english

File:

PDF, 3.92 MB

english, 2016

28

Protein Kinase C Controls Binding of Igo/ENSA Proteins to Protein Phosphatase 2A in Budding Yeast

Thai, Vu, Dephoure, Noah, Weiss, Amit, Ferguson, Jacqueline, Leitao, Ricardo, Gygi, Steven P., Kellogg, Douglas R.

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 3.17 MB

english, 2017

29

Quantitative proteomics of MDCK cells identify unrecognized roles of clathrin adaptor AP-1 in polarized distribution of surface proteins

Caceres, Paulo S., Gravotta, Diego, Zager, Patrick J., Dephoure, Noah, Rodriguez-Boulan, Enrique

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 1.89 MB

english, 2019

30

Reply to "Phosphorylation sites of higher stoichiometry are more conserved"

Gygi, Steven P, Huttlin, Edward L, Wu, Ronghu, Haas, Wilhelm, Dephoure, Noah, Sowa, Mathew, Zhai, Bo

Journal:

Year:

2012

Language:

english

File:

PDF, 144 KB

english, 2012

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